Professor Tim Stinear

Tim completed his PhD at Monash University in 2001, followed by a three-year postdoctoral period at the Pasteur Institute in Paris, France. During this time, Tim determined the first complete genome sequence (the genetic blueprint) for Mycobacterium ulcerans – a bacterium that causes a very serious ulcerative skin infection called Buruli ulcer. Since then, he has been at the forefront of implementing genomic and computational approaches to study a range major bacterial pathogens such as Golden Staph and VRE.

Antimicrobial-resistant bacterial pathogens

Antimicrobial resistance has been highlighted by the world health organisation (WHO) and the Centres for Disease Control in the USA as one of the major public health threats of our time. Ben’s group, which is co-located with the state-wide public health and reference laboratory MDU PHL), uses epidemiology and bacterial genomics to understand the characteristics and spread of antimicrobial-resistant pathogens in hospitals and the community. Recent examples include the investigation of an outbreak of CTX-M 15 producing multi-drug resistant ST131 E. coli, locally acquired azithromycin-resistant Shigella flexneri infections, KPC producing K. pneumoniae, and drug-resistant Neisseria gonorrhoeae.
Hospital superbugs

Staphylococcus aureus and Enterococcus faecium are two major opportunistic human pathogens. Staphylococcus aureus causes a wide range of hospital and community-acquired infections. The mortality rate for serious Staphylococcus aureus infection, particularly methicillin resistant Staphylococcus aureus (MRSA) is high (20–30% of bacteraemia), and the social and financial burden of Staphylococcus aureus-related disease in Australia and worldwide is becoming increasingly significant. Enterococci are members of the gastrointestinal microbiota but they have also emerged as a major cause of healthcare associated infections, accounting for approximately 10% of human cases of bacteraemia. Enterococcus faecium (Efm) and Enterococcus faecalis are the two enterococci that most frequently cause human infections, with resistance to the last-line antibiotic vancomycin becoming common in Enterococcus faecium (VREfm) in the past two decades. Tim’s group is investigating the molecular basis for increasing resistance to antibiotics and also the cleaning agents commonly used to disinfect health care facilities.
Mycobacterial pathogens

Tuberculosis (TB) and Buruli ulcer (BU) are distinct but serious diseases caused by infection with Mycobacterium tuberculosis and Mycobacterium ulcerans respectively. TB causes hundreds of thousands of deaths each year and millions of people are infected worldwide. The emergence of multi-drug resistant strains is a major concern. Tim’s group is using the power of genomics to better understand how Mycobacterium tuberculosis causes disease and to use that information to help develop an effective vaccine. BU is a neglected disease and each year, 5000 to 6000 cases are reported from 33 countries across the globe, predominantly from rural regions in West and Central Africa. The disease involves subcutaneous tissue and has several manifestations but necrotic skin ulcers are a common presentation, caused by the proliferation of bacteria beneath the dermis and a secreted bioactive bacterial lipid toxin called mycolactone. Employing genomics, Tim’s group has been at the forefront of describing the biosynthesis and role of mycolactone but the role of this molecule in the natural ecology of Mycobacterium ulcerans is not understood. Epidemiological studies frequently link BU occurrence with low-lying and wetland areas, and human-to-human transmission is rare, suggesting an environmental source of the mycobacterium. Despite more than 70 years of research, the environmental reservoir(s) and mode(s) of transmission of Mycobacterium ulcerans remain unknown. Tim’s group’s research aims to address these key questions.

Tim is leading a major project in collaboration with the Department of Health and Human Services, Barwon Health, Austin Health, CSIRO, Agriculture Victoria, the University of Melbourne and Mornington Peninsula Shire to understand how Buruli ulcer is spread and to indentify effective ways to intervene and reduce infections. For more information, visit the Beating Buruli in Victoria website.
New antibiotics from old bacteria

Development of new antibiotics is key to addressing the crisis in human health caused by the rise of multi-drug resistant superbugs. Empirical screening of bacteria and fungi for bioactive molecules has been the source of the most successful existing antibiotics. The most prolific producers of these metabolites are the Actinobacteria, but high re‑discovery rates amongst soil-derived organisms demand the testing of new reservoirs of biodiversity. Recent studies have shown that human-associated bacteria represent a previously untapped source of antimicrobial diversity and we have begun exploring the antimicrobial activity of a collection of 700 human pathogenic Actinobacteria held by the state microbiology reference laboratory.
Public health and clinical microbial genomics

Together with Professor Ben Howden, Tim has created the Doherty Applied Microbial Genomics centre – a research centre focused on establishing microbial genomics as a tool for clinical and public health microbiology in Australia. The sequencing capacity and bioinformatics expertise across the Ben and Tim’s research groups makes them uniquely placed to perform and facilitate applied microbial genomics research.

Stinear Group

Tim Stinear’s group’s research addresses priorities across four connected themes that including hospital superbugs, pathogenic mycobacteria, natural product discovery and public health genomics that aim to understand and contain the spread of bacteria causing serious human disease.

Lab Team
- Professor Tim Stinear
  
  Laboratory Head and Director of the WHO Collaborating Centre for Mycobacterium ulcerans
- Dr Ian Monk
  
  Postdoctoral Researcher
- Jessica Porter
  
  Laboratory Manager, Molecular microbiology
- Dr Jean Lee
  
  Senior postdoctoral scientist, Molecular microbiology
- Dr Abdou Hachani
  
  Senior Researcher
- Dr Louise Judd
  
  DAMG senior scientist, Genomics
- Dr Geraldine Kong
  
  Postdoctoral scientist, Computational biology
- Dr Andrew Buultjens
  
  Postdoctoral scientist, Computational biology
- Dr Prashanth Ramachandran
  
  NHMRC Emerging Leader Investigator, Clinical metagenomics
- Dr Liam Sharkey
  
  Senior postdoctoral scientist, Molecular microbiology
- Dr Calum Walsh
  
  Senior postdoctoral scientist, Computational biology
- Dr Nancy Wang
  
  Senior postdoctoral scientist, Immunology and microbiology
- Dr Ryan Wick
  
  Postdoctoral scientist, Computational biology
- Jessica Gu
  
  Project manager
- Angela Donald
  
  Project manager
- John Forsyth
  
  PhD student
- Dr Stephen Muhi
  
  Infectious Diseases Physician | Medical Education Consultant | PhD Candidate
- Alexandra Krause
  
  PhD student
- Rutaiwan Dusadeepong
  
  PhD student
- Karolina Mercoulia
  
  PhD student
- Sarah Zufan
  
  PhD student
- Warasinee Mujchariyakul
  
  PhD student
- Angaj Ghosh
  
  PhD student
- Dr Andre Mu
  
  Research Fellow
- Dr Koen Vandelannoote
  
  Senior postdoctoral scientist, Honorary lab staff

Professor Tim Stinear

Stinear Group

Lab Team