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Research Groups
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Kedzierska Group
Professor Katherine Kedzierska’s team researches immunity to viral infections, especially the newly emerged SARS-CoV-2 and influenza viruses. Her work spans basic research from mouse experiments to human immunity through to clinical settings, with particular focus on understanding universal CD8+ T cell immunity to respiratory viruses. Her studies aim to identify key correlates of severe and fatal respiratory disease in high-risk groups including children, the elderly, Australian First Nations people, pregnant women and patients with co-morbidities.
Other work areas include:COVID-19, Viral Infectious Diseases, Influenza
Current Projects
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Defining immune responses to emerging and re-emerging viral infections
Respiratory viruses such as influenza and SARS-CoV-2 are constant threats to global health. Drawing on their pioneering studies, cutting-edge technologies and powerful clinical cohorts, Katherine’s group has been at the forefront of global research to provide urgently needed knowledge on immune responses underlying recovery or susceptibility to severe/fatal disease from respiratory viruses, with a focus on protective killer T cells. Katherine’s group was the first in the world to publish on immune responses preceding recovery from COVID-19. Their findings provided the immunological blueprint to the global research community on immune responses in COVID-19. Their data and assays were utilised by researchers worldwide (1183 citations) and these in-depth immunological protocols developed for COVID-19 were used to evaluate COVID-19 vaccines, including the University of Queensland and Doherty Institute vaccine candidates, and COVID-19 vaccines in high-risk groups, including First Nations people, patients with cancer and autoimmune diseases. The Kedzierska Lab’s pioneering COVID-19 work was based on a decade of research on immunity to emerging and re-emerging viral infections, together with well-established ‘ready to go’ protocols for understanding immunity to newly-emerging potentially pandemic viruses, with a rapid access to diverse patient cohorts.
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To identify correlates of severe and fatal respiratory virus disease in high-risk groups
Enhanced susceptibility and exacerbated disease severity to respiratory viruses such as influenza and SARS-CoV-2 can reflect over-activation of the innate immune system, impaired humoral and cellular immunity, and can be influenced by host genetic factors (HLA or IFITM3). Understanding the immune perturbations that lead to severe disease in high-risk groups will provide insight into how immune interventions might minimise the incidence of severe disease. Katherine’s group studies the contributions of virological, immunological, clinical, molecular and host factors to susceptibility, clinical severity and outcome for different high-risk groups: (i) young children and the elderly (with Professor Katie Flanagan from Launceston General Hospital and Dr Jane Crowe from Deepdene Surgery); (ii) Australian First Nations people (with Professor Jane Davies from Menzies and Professor Adrian Miller from Central Queensland University); (iii) pregnant women (with Susan Walker from the Mercy Hospital/UoM); and (iv) high-risk groups hospitalised through FluCAN (with Professor Allen Cheng and Associate Professor Tom Kotsimbos from the Alfred Hospital) and Shanghai Public Clinical Hospital at Fudan University in China (with Professor Xu). As part of their multidisciplinary approach, the Kedzierska Lab uses murine models to further define mechanisms and biomarkers underpinning severe and fatal disease from viral infections. Furthermore, their work also examines the efficacy of virus-specific immune responses to vaccination in high-risk groups, including Australian First Nations people and patients with cancer and autoimmune diseases (with Professor Benjamin Teh from The Peter MacCallum Cancer Centre). These finding provide key information for vaccine development and delivery to protect these high-risk groups.
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To define ‘universal’ influenza-specific CD8+ T-cell responses across different human leukocyte antigens (HLAs)
Although CD8+ T cells confer broadly cross-reactive or ‘universal’ immunity to distinct influenza viruses and can limit influenza-induced mortality, the overall efficacy of human influenza A virus-specific CD8+ T cells directed at any conserved and/or variable epitopes remains unclear. Here, Katherine’s group aims to (i) understand influenza-specific CD8+ T cell immunity across different HLAs; (ii) determine the efficacy of immunodominant CD8+ T cell responses in humans; (iii) evaluate the conservation of immunogenic epitopes in birds, pigs and humans through analysis of viral evolutionary history; and (iv) understand immunity to clinically important but understudied influenza B viruses. This work has key implications for the design of universal broadly protective influenza vaccines not requiring annual reformulation. As the Kedzierska Lab have shown that current inactivated influenza vaccines do not induce CD8+ T cell immunity, their research also focuses on how to elicit protective CD8+ T cell immunity by vaccination.
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To unravel mechanisms underlying the early generation of human CD8+ T cell memory
Though immunological memory is of pivotal importance for vaccine development and immunotherapy, the molecular and differentiation pathways central to the generation of (particularly) human CD8+ T cell memory are poorly understood. Here, Katherine’s group aims to establish the key factors driving the early establishment of influenza-specific T cell memory. As memory is crucial for protection against recurrent infections, this work will provide novel insights into the generation and efficacy of human T cell memory populations and inform effective immunotherapy strategies.
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The impact of co-infection on immune responses to influenza
Infectious diseases are often studied in isolation, by measuring parameters in an individual with a known infection or in an experimentally infected animal. However, the reality is that people can have more than one infection, perhaps in sequence or concurrently, and that each may affect the other, often having a negative effect on human health. The Kedzierska Lab is interested in understanding how co-infection of influenza with other viruses can affect disease outcome. Arboviruses (vector-borne RNA viruses transmitted by arthropods such as ticks or mosquitos), have been responsible for epidemics with a high burden of neurological disease (e.g. Japanese encephalitis virus (JEV), West Nile, tickborne, encephalitis and Zika viruses). Considering that many neurotropic arboviral infections are asymptomatic, but the virus appears to persist in the brain for the life of the host, there remain many key questions about the effect that these virus infections have on the development of the immune response to a second virus infection and the potential to exacerbate disease severity. Work in the Kedzierska Lab dissects the immunological, virological and immunopathological changes that occur during co-infection with two viral pathogens.
Lab Team
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Laboratory Head
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Senior Research Fellow
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Senior Research Fellow
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Senior Research Fellow
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Senior Research Fellow
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Senior Research Fellow
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Research Fellow
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Research Officer
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Lily AllenResearch Assistant
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Jennifer HabelPhD Candidate
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Wuji ZhangPhD Candidate
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Isabelle FooPhD Candidate
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Howard HuangPhD Candidate
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Deborah GebregzabherHonours Student
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Dr Ryan ThwaitesVisiting Researcher from Imperial College London
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PhD Candidate
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Barrow group
My lab is interested in how receptors expressed by immune cells distinguish normal healthy cells from malignant cells or pathogens. We want to understand how these receptors work together to regulate immune responses so we can design better clinical interventions.
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Bedoui Group
The Bedoui Lab uses models of viral and bacterial infection to study how the innate and the adaptive immune system interact. Key foci are to understand how innate cells sense pathogens and how this information is integrated into protective adaptive T cell responses.
Other work areas include:Bacterial and Parasitic Infections
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Brooks Group
Research in Andrew’s laboratory is largely centred on how natural killer cells and T cells impact the outcomes of viral infection, cancer and transplantation.
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Chung group
The Chung group is interested in understanding the biophysical and functional properties of antibodies that are associated with protection against a range of infectious diseases, which will provide important insights to improve antibody-based vaccines and therapies.
Other work areas include:COVID-19, Viral Infectious Diseases
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Corbett Group
Our team study mucosal-associated invariant T (MAIT) cells. We seek to understand how vitamin-based antigens are produced by microorganisms, how MAIT cells detect these antigens and how we can manipulate MAIT cell functions to improve outcomes in infectious and non-infectious diseases.
Other work areas include:Bacterial and Parasitic Infections
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Gebhardt Group
Thomas’ group studies basic and translational aspects of immune responses in peripheral tissues. Their overall goal is to develop future vaccines and immunomodulatory therapies that target peripheral T cells for improved clinical outcomes in infection, inflammation and cancer.
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Heath Group
Professor Bill Heath’s group’s cellular immunology research currently focuses on understanding killer T cell function with particular reference to improved vaccination strategies and understanding malarial disease.
Other work areas include:Malaria
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Kallies Group
The Kallies laboratory studies the molecular control of T-cell differentiation and function in the context of chronic disease, including infection and cancer.
Other work areas include:Viral Infectious Diseases
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Kent Group
Stephen’s group studies immunity to HIV, influenza and SARS-CoV-2. They are analysing a variety of vaccine strategies, including nanoparticle-based vaccines. They are studying a series of immune responses to gain better insights into protective immunity to important viral pathogens. They are developing monoclonal antibody therapies for HIV, influenza and SARS-CoV-2 to improve the treatment of these infections. The Kent group works very closely with Dr Amy Chung’s laboratory at the Doherty Institute.
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Laura Mackay Group
The Mackay Lab studies memory T cell responses, with a focus on the signals that control tissue-resident memory T cell differentiation, and a view to harness these cells to develop new treatments against infection, cancer and autoimmune conditions.
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Lewin Group
The focus of the Lewin group is to understand why HIV infection persists on antiretroviral therapy and to develop new strategies to eliminate latency. The lab also researches factors that drive liver disease in HIV-hepatitis B virus co-infection. The lab is also actively involved in COVID in relation to pathogenesis, the use of primary tissue models, and developing therapeutics using gene editing strategies.
Other work areas include:Viral Infectious Diseases
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Liaskos Group
The Liaskos group is primarily focused on understanding the cellular and molecular mechanisms of host-pathogen interactions, with particular focus on bacterial pathogens and bacterial membrane vesicles. We use a range of microbiology and immunology-based techniques to examine how bacterial pathogens that infect humans cause disease, and how the host detects and responds to these pathogens and their products.
Other work areas include:Antimicrobial Resistance, Bacterial and Parasitic Infections
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Mantamadiotis Group
The Mantamadiotis group studies basic and translational aspects of molecular and cellular responses in brain cancer. Their overall goal is to develop future therapies, including immunomodulatory therapies that target the tumour cells and tumour infiltrating lymphocytes for improved clinical outcomes in cancer.
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Matthew McKay Group
The McKay Group focuses on developing computational models, statistical and machine learning methods to address problems in infectious diseases and immunology. Current research is aimed at understanding virus evolution and immune escape and for identifying potent targets for next-generation vaccines.
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McCluskey Group
MAIT cells respond to precursors of riboflavin, allowing the immune system to detect microbial invaders. The McCluskey group aims to understand their role in infection/inflammatory conditions and is tackling this question using mouse models, human tissue analysis and structural biology.
If you are interested to collaborate with us, please, feel free to get in touch. Please note that the human and mouse MR1 tetramers developed in our laboratory can now be ordered through the NIH tetramer core facility.
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Mueller Group
Research in the Mueller laboratory is focused on dissecting the fundamental cellular processes involved in immune and neuro-immune responses to viruses and cancer in order to identify new targets for vaccines and novel therapeutics. We use advanced imaging and image analysis, single cell and spatial transcriptomics, transgenic mice, CRISPR editing and neuroscience tools to address these crucial knowledge gaps.
Other work areas include:Malaria
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Purcell Lab
Professor Damian Purcell’s research group investigates the HIV-1 and HTLV-1 human retroviruses that cause AIDS and leukaemia/inflammatory pathogenesis respectively. The lab studies their genetic structure and gene expression with a focus on defining the mechanisms that control viral persistence and pathogenesis. The molecular interplay of viral and host factors during viral infection and the innate and adaptive immune responses to viral infection are examined. These molecular insights are used to develop new antiviral and curative therapeutics, preventive prophylactic vaccines and passive antibody microbicides and therapeutics. Some of these patented discoveries have been commercialised and we are assisting with clinical trials.
Other work areas include:COVID-19, Viral Infectious Diseases, Bacterial and Parasitic Infections, HIV
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Reading Group
Patrick’s group investigates how the body first detects and responds to respiratory viruses. They investigate viral attachment factors, cellular receptors and entry pathways, virus-induced activation of host genes and the mechanisms by which intracellular host proteins can block virus replication.
Other work areas include:COVID-19, Viral Infectious Diseases, Influenza
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Robins-Browne Group
Research in Roy’s laboratory is partly focused on how E. coli causes diarrhoea, with the aims of identifying better ways to diagnose, treat and prevent these infections. Another theme is the development of new types of antibacterial agents.
Other work areas include:Enteric infections, Antimicrobial Resistance
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Sullivan Group
Sheena’s epidemiology group at the WHO Collaborating Centre for Reference and Research on Influenza undertakes research into understanding influenza vaccine effectiveness and the validity of the methods used to estimate it. The group also provides technical assistance to partners in the Western Pacific Region of the WHO.
Other work areas include:COVID-19, Viral Infectious Diseases, Influenza
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Tong Group
Steve’s group conducts clinical trials to optimise the treatment of infections due to methicillin-resistant Staphylococcus aureus and other bacterial pathogens. He also investigates the epidemiology and genomics of streptococcal infections, hepatitis B, influenza, and antimicrobial resistance in Australian Indigenous communities.
Other work areas include:Staphylococcus aureus, Viral Infectious Diseases, Antimicrobial Resistance, Bacterial and Parasitic Infections, Public Health
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Utzschneider Group
The Utzschneider Group group studies the mechanisms inducing T cell exhaustion with the ultimate goal to identify targets that can lead to the design and development of novel therapeutic treatments to improve health of patients suffering from chronic infections or cancer.
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Vaccine Research Group
Based at the Doherty Institute, the Vaccine Research Group works in partnership with the Murdoch Children’s Research Institute (MCRI, Infection and Immunity Theme). Our research enables us to advise policy makers on the optimal use of vaccines in national immunisation schedules, in pandemic influenza preparedness and response, and in vaccine safety. Our work provides practical bridges (translation) between theory and the real-world delivery of vaccine programs.
Now recruiting volunteers
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Your participation in the study will help to determine whether an investigational vaccine helps to provide protection against respiratory syncytial virus (RSV) in different populations.
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Other work areas include:COVID-19, Viral Infectious Diseases
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Valkenburg Lab
The Valkenburg laboratory investigates viral immunity to emerging viruses with pandemic potential: influenza viruses and SARS-CoV-2. Our work spans randomised control vaccine trials, observational studies of infected patients and animal models to decipher immune correlates to drive novel translational outcomes for specific diagnostics, targeted therapeutics and next generation vaccines for public health impact.
Other work areas include:COVID-19, Viral Infectious Diseases, Public Health, Influenza
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Villadangos Group
Professor Jose Villadangos' group combines immunology, biochemistry and cell biology to study how the adaptive immune system detects pathogens and cancer, a process called Antigen Presentation. Their research is applicable to vaccine development, treatment of critically ill patients and the fight against cancer.
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Wakim Group
Linda’s group’s main research focus is understating the mechanism of action and regulation of expression of antiviral proteins. Linda’s group also aims to characterise CD8 T cell responses within the lung following virus infection.
Other work areas include:Influenza
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